6KXZ
HUMAN PARALLEL STRANDED 7-MER G-QUADRUPLEX COMPLEXED WITH 2 EPIRUBICIN (EPI) MOLECULES
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 1D | 1.11 mM (DT5)TAGGG(DT3), 2.22 mM Epirubicin | 90% H2O/10% D2O | 100 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 500 |
| 2 | 2D 1H-1H NOESY | 1.11 mM (DT5)TAGGG(DT3), 2.22 mM Epirubicin | 90% H2O/10% D2O | 100 mM | 7.4 | 1 atm | 298 | Bruker AVANCE 500 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 35 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN | |
| 2 | structure solution | TopSpin | 3.6 | |
