6K5W
Solution structure of the chromodomain of yeast Eaf3
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
2 | 2D 1H-13C HSQC | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
3 | 3D CBCANH | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
4 | 3D CBCA(CO)NH | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
5 | 3D HNCA | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
12 | 3D HN(CO)CA | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
10 | 3D HNCO | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
11 | 3D HN(CA)CO | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
9 | 3D HBHA(CO)NH | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
8 | 3D CC(CO)NH | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 500 |
7 | 3D H(CC)(CO)HN | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 500 |
6 | 3D HCCH-TOCSY | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
22 | 3D HCCH-COSY | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 500 |
13 | 3D HNHA | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
16 | 3D HNHB | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
15 | 3D HN(CO)HB | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
14 | 3D HNCG | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
17 | 3D HN(CO)CG | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
19 | 2D CGCBH | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
23 | 2D CGCDH | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
21 | 2D CGCEH | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
20 | 2D HBCBCDHD | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
18 | 2D HBCBCGCEHE | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
25 | 2D DQF-COSY | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
24 | 2D 1H-1H TOCSY | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 600 |
27 | 3D 1H-15N NOESY | 1.47 mM [U-13C,15N] Eaf3 | 90% H2O/10% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
26 | 3D 1H-13C NOESY | 1.47 mM [U-13C,15N] Eaf3 | 100% D2O | 30 mM | 6.8 | 1 atm | 298 | Bruker AVANCE 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | peak picking | NMRView | Johnson, One Moon Scientific | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
8 | data analysis | PROCHECK / PROCHECK-NMR | Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton |