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Crystal structure of the SPRY domain of SPSB2 in complex with cR9, a cyclic peptide inhibitor of SPSB-iNOS interaction
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 0.02M Citric acid, 0.08M Bis-Tris propane pH7.6, 14%(w/v0 Polyethylene glycol 3350
Crystal Properties Matthews coefficient Solvent content 1.85 33.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.411 α = 87.72 b = 46.386 β = 75.01 c = 61.177 γ = 89.92
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NFPSS BEAMLINE BL19U1 0.9789 NFPSS BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 59.05 96.3 7.6 5.3 42845
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.64
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.61 59.05 40695 2131 96.38 0.18598 0.18496 0.20506 0.2299 RANDOM 13.634
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.17 -0.4 0.27 0.38 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.951 r_dihedral_angle_3_deg 13.151 r_dihedral_angle_4_deg 12.7 r_dihedral_angle_1_deg 10.18 r_long_range_B_other 4.661 r_long_range_B_refined 4.657 r_scangle_other 3.266 r_mcangle_other 2.448 r_mcangle_it 2.443 r_scbond_it 2.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.951 r_dihedral_angle_3_deg 13.151 r_dihedral_angle_4_deg 12.7 r_dihedral_angle_1_deg 10.18 r_long_range_B_other 4.661 r_long_range_B_refined 4.657 r_scangle_other 3.266 r_mcangle_other 2.448 r_mcangle_it 2.443 r_scbond_it 2.091 r_scbond_other 2.085 r_angle_refined_deg 1.646 r_mcbond_it 1.49 r_mcbond_other 1.49 r_angle_other_deg 0.571 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3120 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing