6JJ0

NMR structure of the 1:1 complex of a carbazole derivative BMVC bound to c-MYC G-quadruplex


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY2.0 mM NA- DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 1.0 mM NA- BMVC, 25 mM NA- potassium phosphate, 70 mM NA- potassium chloride90% H2O/10% D2O100 mM7.01 atm298Bruker DRX 600
22D DQF-COSY2.0 mM NA- DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 1.0 mM NA- BMVC, 25 mM NA- potassium phosphate, 70 mM NA- potassium chloride90% H2O/10% D2O100 mM7.01 atm298Bruker DRX 600
32D 1H-1H TOCSY2.0 mM NA- DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3'), 1.0 mM NA- BMVC, 25 mM NA- potassium phosphate, 70 mM NA- potassium chloride90% H2O/10% D2O100 mM7.01 atm298Bruker DRX 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR
DGSA-distance geometry simulated annealingInsight II
molecular dynamicsSparky
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLORBrunger
2structure calculationInsight IIAccelrys Software Inc.
3chemical shift assignmentSparkyGoddard
4peak pickingSparkyGoddard