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Ligand complex structure of GH10 family xylanase XynAF1, soaking for 30 minutes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MES pH6.5, 25%(w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.14 42.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.426 α = 73.97 b = 57.357 β = 80.8 c = 64.91 γ = 68.77
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.979 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 62.25 91.58 0.08 17.36 3.4 96822 12.35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.43 1.482 87.94 0.422 2.88 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.43 62.25 92077 4744 91.58 0.1406 0.1392 0.1404 0.1696 0.1711 RANDOM 14.269
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.16 -0.16 0.24 -0.89 0.28 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.119 r_dihedral_angle_3_deg 11.984 r_dihedral_angle_1_deg 6.964 r_dihedral_angle_4_deg 3.395 r_angle_refined_deg 2.271 r_angle_other_deg 1.182 r_chiral_restr 0.155 r_bond_refined_d 0.024 r_gen_planes_refined 0.016 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.119 r_dihedral_angle_3_deg 11.984 r_dihedral_angle_1_deg 6.964 r_dihedral_angle_4_deg 3.395 r_angle_refined_deg 2.271 r_angle_other_deg 1.182 r_chiral_restr 0.155 r_bond_refined_d 0.024 r_gen_planes_refined 0.016 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4870 Nucleic Acid Atoms Solvent Atoms 578 Heterogen Atoms 119
Software Software Software Name Purpose HKL-2000 data reduction HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing