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Bifunctional xylosidase/glucosidase LXYL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289.15 15% PEG 3350, 0.1M Hepes pH 7.5, 0.2% MgCl2
Crystal Properties Matthews coefficient Solvent content 2.54 51.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.913 α = 90 b = 131.913 β = 90 c = 385.937 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97925 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.66 0.155 23.6 12.8 126287
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 98.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.4 50 126287 6872 99.7 0.188 0.184 0.1895 0.251 0.2528 RANDOM 34.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.16 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.32 r_dihedral_angle_4_deg 18.841 r_dihedral_angle_3_deg 15.055 r_dihedral_angle_1_deg 6.587 r_long_range_B_refined 5.007 r_long_range_B_other 4.758 r_scangle_other 2.467 r_mcangle_other 2.21 r_mcangle_it 2.209 r_scbond_it 1.541
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.32 r_dihedral_angle_4_deg 18.841 r_dihedral_angle_3_deg 15.055 r_dihedral_angle_1_deg 6.587 r_long_range_B_refined 5.007 r_long_range_B_other 4.758 r_scangle_other 2.467 r_mcangle_other 2.21 r_mcangle_it 2.209 r_scbond_it 1.541 r_scbond_other 1.541 r_angle_refined_deg 1.527 r_mcbond_it 1.392 r_mcbond_other 1.39 r_angle_other_deg 0.983 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22981 Nucleic Acid Atoms Solvent Atoms 1544 Heterogen Atoms 984
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling PHASER phasing