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NMR solution structures of 5'-ATTCTATTCT-3
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.0 mM No labeling DNA, 10.0 mM No labeling sodium phosphate, 0.020 mM No labeling DSS 100% D2O 10.0 mM 7.0 1 bar 278 Bruker AVANCE 700 2 2D 1H-1H TOCSY 1.0 mM No labeling DNA, 10.0 mM No labeling sodium phosphate, 0.020 mM No labeling DSS 100% D2O 10.0 mM 7.0 1 bar 278 Bruker AVANCE 700 3 2D DQF-COSY 1.0 mM No labeling DNA, 10.0 mM No labeling sodium phosphate, 0.020 mM No labeling DSS 100% D2O 10.0 mM 7.0 1 bar 278 Bruker AVANCE 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 700
NMR Refinement Method Details Software restrained molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 1000 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 16 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 chemical shift assignment TopSpin Bruker Biospin