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Crh5 transglycosylase in complex with NAG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1M sodium acetate trihydrate pH 4.0, 1,6M ammonium sulphate, 21mM ZnCl2
Crystal Properties Matthews coefficient Solvent content 2.3 46.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.39 α = 90 b = 75.3 β = 90 c = 117.41 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2015-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.965000 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 46.3 98.93 0.106 0.133 0.079 14.26 4 12543
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 0.362 0.454 0.27 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.8 46.34 11876 623 98.95 0.19129 0.18873 0.1917 0.24013 0.2408 RANDOM 27.111
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.6 2.02 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.332 r_dihedral_angle_4_deg 26.593 r_dihedral_angle_3_deg 21.097 r_long_range_B_refined 7.066 r_long_range_B_other 7.065 r_dihedral_angle_1_deg 6.284 r_scangle_other 3.682 r_mcangle_it 3.128 r_mcangle_other 3.127 r_scbond_it 2.288
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.332 r_dihedral_angle_4_deg 26.593 r_dihedral_angle_3_deg 21.097 r_long_range_B_refined 7.066 r_long_range_B_other 7.065 r_dihedral_angle_1_deg 6.284 r_scangle_other 3.682 r_mcangle_it 3.128 r_mcangle_other 3.127 r_scbond_it 2.288 r_scbond_other 2.288 r_mcbond_it 1.841 r_mcbond_other 1.841 r_angle_refined_deg 1.797 r_angle_other_deg 1.43 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3674 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing