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Copper binding protein from Laetisaria arvalis (LaX325)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1:1 ratio of protein:reservoir solution in MRC plates using an Oryx-8 robot.
Protein concentration: 13.3 mg/ml
Reservoir solution (Morpheus screen #40):
12.5 (w/v)MPD, 12.5 (w/v)PEG1000, 12.5 (w/v)PEG3350.
20mM 1,6-hexanediol, 20mM 1-butanol, 20mM (RS)1,2-propandiol, 20mM 2-propanol, 20mM 1,4-butandiol, 20mM 1,3-propandiol.
50 mM MES monohydrate pH 6.5, 50 mM imidazole pH 6.5.
Crystal Properties Matthews coefficient Solvent content 2.28 46.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.94 α = 90 b = 67.59 β = 97.94 c = 68.9 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.9799 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 68.25 95.1 0.097 0.997 11.79 7.4 25629 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.87 68.9 0.911 0.816 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.82 68.24 24384 1287 94.93 0.1691 0.16711 0.1764 0.20753 0.2175 RANDOM 37.953
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -2.69 2.11 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.808 r_dihedral_angle_1_deg 15.844 r_dihedral_angle_3_deg 12.977 r_dihedral_angle_4_deg 11.939 r_long_range_B_refined 6.57 r_long_range_B_other 6.569 r_scangle_other 5.555 r_mcangle_it 3.911 r_mcangle_other 3.91 r_scbond_it 3.798
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.808 r_dihedral_angle_1_deg 15.844 r_dihedral_angle_3_deg 12.977 r_dihedral_angle_4_deg 11.939 r_long_range_B_refined 6.57 r_long_range_B_other 6.569 r_scangle_other 5.555 r_mcangle_it 3.911 r_mcangle_other 3.91 r_scbond_it 3.798 r_scbond_other 3.797 r_mcbond_it 2.93 r_mcbond_other 2.928 r_angle_refined_deg 1.386 r_angle_other_deg 0.939 r_chiral_restr 0.066 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2240 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 161
Software Software Software Name Purpose MxCuBE data collection XDS data reduction XSCALE data scaling REFMAC refinement Coot model building