6IA0

Human telomeric G-quadruplex with 8-oxo-G substitution in the central G-quartet


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY1 mM DNA90% H2O/10% D2O70 mM71 atm278Agilent DDR2 800
22D 1H-1H TOCSY1 mM DNA90% H2O/10% D2O70 mM71 atm278Agilent DDR2 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentDDR2800
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number12
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCcpNmr AnalysisCCPN
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3structure calculationAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman