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Trypanothione Reductase from Leismania infantum in complex with TRL156
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JK6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 2.2M ammonium sulphate, 0.1M Tris-HCl pH 8-8.5
Crystal Properties Matthews coefficient Solvent content 2.2 44.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.184 α = 90 b = 106.387 β = 90 c = 186.548 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 46.68 81.7 0.07 0.99 5.2 3.3 23420
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.56 0.39 0.79 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2JK6 3.3 46.68 22213 1111 80.66 0.23825 0.23654 0.2389 0.27323 0.2729 RANDOM 85.879
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.35 -0.58 -4.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.91 r_dihedral_angle_3_deg 17.855 r_dihedral_angle_4_deg 17.136 r_long_range_B_refined 12.478 r_long_range_B_other 12.444 r_dihedral_angle_1_deg 7.438 r_mcangle_it 6.386 r_mcangle_other 6.376 r_scangle_other 6.308 r_mcbond_it 3.807
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.91 r_dihedral_angle_3_deg 17.855 r_dihedral_angle_4_deg 17.136 r_long_range_B_refined 12.478 r_long_range_B_other 12.444 r_dihedral_angle_1_deg 7.438 r_mcangle_it 6.386 r_mcangle_other 6.376 r_scangle_other 6.308 r_mcbond_it 3.807 r_mcbond_other 3.794 r_scbond_it 3.752 r_scbond_other 3.75 r_angle_refined_deg 1.606 r_angle_other_deg 1.331 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7401 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 170
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing