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Structure of the alpha-Synuclein PreNAC/Cyclophilin A-complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5KUL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 1.93 M tri-ammonium citrate, pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.12 60.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.034 α = 90 b = 61.034 β = 90 c = 129.152 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 44.4 99.7 0.055 27.39 24.01 51144
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.4 92.6 0.808 12.56
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5kul 1.38 44.4 48509 2548 99.73 0.1639 0.1631 0.169 0.1778 0.1839 RANDOM 24.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.43 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.765 r_dihedral_angle_4_deg 23.108 r_dihedral_angle_3_deg 12.907 r_dihedral_angle_1_deg 6.27 r_angle_refined_deg 2.182 r_angle_other_deg 1.617 r_chiral_restr 0.124 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.765 r_dihedral_angle_4_deg 23.108 r_dihedral_angle_3_deg 12.907 r_dihedral_angle_1_deg 6.27 r_angle_refined_deg 2.182 r_angle_other_deg 1.617 r_chiral_restr 0.124 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1347 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 10
Software Software Software Name Purpose XDS data reduction XPREP data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction