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Crystal structure of murine neuroglobin bound to CO at 15K under illumination using optical fiber
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q1F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M NA ACETATE, 2M NA FORMATE, Ph 4.6
Crystal Properties Matthews coefficient Solvent content 2.43 49.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.043 α = 90 b = 88.043 β = 90 c = 110.16 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 15 CCD ADSC QUANTUM 4 2010-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 44.63 98.5 0.055 16.9 3.7 12847
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.9 0.373 3 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1q1f 1.9 36.04 12211 628 97.69 0.16949 0.16732 0.1752 0.21454 0.2166 RANDOM 26.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.095 r_dihedral_angle_3_deg 17.357 r_dihedral_angle_4_deg 16.505 r_dihedral_angle_1_deg 5.096 r_scangle_it 2.973 r_scbond_it 1.878 r_angle_refined_deg 1.373 r_mcangle_it 1.309 r_mcbond_it 0.765 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.095 r_dihedral_angle_3_deg 17.357 r_dihedral_angle_4_deg 16.505 r_dihedral_angle_1_deg 5.096 r_scangle_it 2.973 r_scbond_it 1.878 r_angle_refined_deg 1.373 r_mcangle_it 1.309 r_mcbond_it 0.765 r_nbtor_refined 0.303 r_xyhbond_nbd_refined 0.274 r_nbd_refined 0.271 r_symmetry_vdw_refined 0.233 r_symmetry_hbond_refined 0.18 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1172 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling REFMAC phasing