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Structure, dynamics and roX2-lncRNA binding of tandem double-stranded RNA binding domains dsRBD1/2 of Drosophila helicase MLE
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 800 2 3D HCCH-TOCSY 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 800 3 3D HNCACB 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 800 4 3D HNCA 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 800 5 3D CBCA(CO)NH 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 800 6 3D 1H-13C NOESY aliphatic 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 600 7 3D H(CCO)NH 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 600 8 3D HNCO 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 600 9 3D HBHA(CO)NH 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 600 10 3D 1H-15N NOESY 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 600 11 2D 1H-13C HSQC aromatic 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 800 12 3D 1H-13C NOESY aromatic 0.5 mM [U-13C; U-15N] MLE dsRBD1,2 90% H2O/10% D2O 200 mM 6 1 bar 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 3 Bruker AVANCE III 800
NMR Refinement Method Details Software simulated annealing ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment CcpNmr Analysis CCPN 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 refinement ARIA Linge, O'Donoghue and Nilges