☰ Navigation Tabs
BP0997, GH138 enzyme targeting pectin rhamnogalacturonan II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 16 % PEG 8000, 100 mM Tris pH 8.4, 9% Butanol
Crystal Properties Matthews coefficient Solvent content 2.03 39.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.298 α = 90 b = 68.379 β = 90 c = 220.158 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9787 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 73.39 90.5 5.9 5.1 100505
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 84.7 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 55.1 95323 5047 90.3 0.156 0.154 0.205 0.2091 RANDOM 19.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.18 -2.66 3.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.522 r_dihedral_angle_4_deg 16.218 r_dihedral_angle_3_deg 12.254 r_rigid_bond_restr 10.004 r_dihedral_angle_1_deg 6.63 r_long_range_B_refined 5.112 r_long_range_B_other 5.112 r_scangle_other 4.556 r_scbond_other 3.966 r_scbond_it 3.965
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.522 r_dihedral_angle_4_deg 16.218 r_dihedral_angle_3_deg 12.254 r_rigid_bond_restr 10.004 r_dihedral_angle_1_deg 6.63 r_long_range_B_refined 5.112 r_long_range_B_other 5.112 r_scangle_other 4.556 r_scbond_other 3.966 r_scbond_it 3.965 r_mcangle_it 3.616 r_mcangle_other 3.615 r_mcbond_it 2.91 r_mcbond_other 2.881 r_angle_refined_deg 1.618 r_angle_other_deg 1.453 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5577 Nucleic Acid Atoms Solvent Atoms 769 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling pointless data scaling PHASER phasing Coot model building MolProbity model building