X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293.1530 mM NaF, 30 mM NaBr, 30 mM NaI, 100 mM Imidazole/MES pH 6.5, 25 % MPD, 25 % PEG 1000 and 25 % PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.5652.05

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.498α = 90
b = 107.376β = 98.68
c = 139.211γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-03-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.747.3599.80.99210.53.855515
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.7899.70.8352.13.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.745.9152768272899.730.216670.213390.28173RANDOM44.56
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.561.014.48-0.22
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.472
r_dihedral_angle_3_deg18.798
r_dihedral_angle_4_deg16.292
r_dihedral_angle_1_deg7.878
r_long_range_B_refined1.719
r_long_range_B_other1.719
r_angle_refined_deg1.557
r_angle_other_deg1.181
r_mcangle_it0.277
r_mcangle_other0.277
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.472
r_dihedral_angle_3_deg18.798
r_dihedral_angle_4_deg16.292
r_dihedral_angle_1_deg7.878
r_long_range_B_refined1.719
r_long_range_B_other1.719
r_angle_refined_deg1.557
r_angle_other_deg1.181
r_mcangle_it0.277
r_mcangle_other0.277
r_scangle_other0.227
r_mcbond_it0.148
r_mcbond_other0.148
r_scbond_it0.14
r_scbond_other0.139
r_chiral_restr0.065
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13926
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
pointlessdata scaling
Aimlessdata scaling
MOLREPphasing
Cootmodel building
MolProbitymodel building