6HYK | pdb_00006hyk

NMR solution structure of the C/D box snoRNA U14

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	atmospheric Pa	283	Bruker DRX 600
2	2D 1H-1H NOESY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	ambient Pa	288	Bruker DRX 600
3	2D 1H-1H NOESY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
4	2D 1H-15N HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	atmospheric Pa	283	Bruker DRX 600
5	2D 1H-15N HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	ambient Pa	288	Bruker DRX 600
6	2D 1H-15N HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
7	2D 1H-13C HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
8	2D 1H-15N HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	ambient Pa	298	Bruker DRX 600
16	2D HNN COSY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	atmospheric Pa	283	Bruker DRX 600
17	2D HNN COSY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	ambient Pa	288	Bruker DRX 600
18	2D HNN COSY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	90% H2O/10% D2O	150 mM NaCl	6.4	ambient Pa	293	Bruker DRX 600
9	2D 1H-1H NOESY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl	6.4	ambient Pa	293	Bruker DRX 600
10	2D 1H-1H NOESY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
11	2D 1H-1H NOESY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl	6.4	ambient Pa	303	Bruker DRX 600
12	2D MLEV	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl	6.4	ambient Pa	293	Bruker DRX 600
13	2D MLEV	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
14	2D MLEV	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl	6.4	ambient Pa	303	Bruker DRX 600
15	2D 1H-13C HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl	6.4	ambient Pa	293	Bruker DRX 600
19	2D 1H-13C HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
20	2D 1H-13C HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl	6.4	ambient Pa	303	Bruker DRX 600
21	2D 1H-13C HSQC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl	6.4	ambient Pa	298	Bruker DRX 600
22	2D DQF-COSY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
23	2D HCN	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
24	3D HCCH-TOCSY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker DRX 600
25	3D HCP	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker AVANCE NEO 500
26	2D HPCOSY	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker AVANCE NEO 500
27	2D HCC	500 uM RNA (31-MER), 500 uM [U-99% 13C; U-99% 15N] RNA (31-MER)	100% D2O	150 mM NaCl M	6.4	ambient Pa	298	Bruker AVANCE NEO 500

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DRX	600
2	Bruker	AVANCE NEO	500

NMR Refinement
Method	Details	Software
torsion angle dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger A. T. et.al.
2	structure calculation	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	processing	TopSpin		Bruker Biospin
4	chemical shift assignment	Sparky		Goddard