X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52935 mM zinc acetate, 100 mM sodium cacodylate pH 6.5, 9 % (w/v) polyethylene glycol 8000
Crystal Properties
Matthews coefficientSolvent content
3.1260.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 136.119α = 90
b = 63.253β = 90
c = 77.551γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2015-10-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I911-30.972MAX III911-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3129.2895.78.43.127962
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.312.39

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3C2S2.3129.2826607135395.530.258580.257590.27719RANDOM50.441
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.70.895.78-5.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.677
r_dihedral_angle_4_deg26.952
r_dihedral_angle_3_deg19.332
r_dihedral_angle_1_deg9.69
r_long_range_B_refined5.946
r_long_range_B_other5.93
r_scangle_other3.822
r_mcangle_it3.507
r_mcangle_other3.506
r_scbond_it2.521
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.677
r_dihedral_angle_4_deg26.952
r_dihedral_angle_3_deg19.332
r_dihedral_angle_1_deg9.69
r_long_range_B_refined5.946
r_long_range_B_other5.93
r_scangle_other3.822
r_mcangle_it3.507
r_mcangle_other3.506
r_scbond_it2.521
r_scbond_other2.521
r_angle_refined_deg2.398
r_mcbond_it2.262
r_mcbond_other2.261
r_angle_other_deg1.524
r_chiral_restr0.109
r_bond_refined_d0.019
r_gen_planes_refined0.015
r_gen_planes_other0.005
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3325
Nucleic Acid Atoms
Solvent Atoms92
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing