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Pentafunctional AROM Complex from Chaetomium thermophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 61 mM MES and 39 mM imidazole pH 6.5, 24% (v/v) ethylene glycol, 12% (w/v) PEG 8000, 30 mM sodium L-glutamate, 30 mM DL-alanine, 30 mM glycine, 30 mM DL-lysine HCl, 30 mM DL-serine
Crystal Properties Matthews coefficient Solvent content 2.98 58.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.943 α = 90 b = 377.616 β = 90 c = 70.882 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 0.978 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 39.8 99.7 0.104 1 13.67 7.02 84026
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.18 99.3 1.34 0.54 1.28 6.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3 39.8 79855 4170 99.71 0.21049 0.20928 0.211 0.23292 0.234 RANDOM 108.917
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.62 4.36 -1.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.397 r_dihedral_angle_3_deg 15.086 r_dihedral_angle_4_deg 14.27 r_dihedral_angle_1_deg 4.967 r_long_range_B_refined 4.676 r_long_range_B_other 4.676 r_mcangle_it 2.993 r_mcangle_other 2.993 r_scangle_other 2.85 r_mcbond_it 1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.397 r_dihedral_angle_3_deg 15.086 r_dihedral_angle_4_deg 14.27 r_dihedral_angle_1_deg 4.967 r_long_range_B_refined 4.676 r_long_range_B_other 4.676 r_mcangle_it 2.993 r_mcangle_other 2.993 r_scangle_other 2.85 r_mcbond_it 1.78 r_mcbond_other 1.78 r_scbond_it 1.69 r_scbond_other 1.69 r_angle_refined_deg 1.048 r_angle_other_deg 0.743 r_chiral_restr 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23389 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 229
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXDE phasing