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Cytochrome P450-153 from Pseudomonas sp. 19-rlim
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RWL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 0.2 M diammonium tartrate, 20% w/v PEG3350
Crystal Properties Matthews coefficient Solvent content 2.23 44.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.311 α = 90 b = 96.642 β = 119.18 c = 87.777 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 1M 2017-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.967700 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44 99.2 0.083 0.999 13.6 6.7 116816
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 99.9 1.155 0.544 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3RWL 1.8 44 111097 5690 99.17 0.17133 0.1698 0.1814 0.20011 0.2108 RANDOM 24.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 -0.5 0.56 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.369 r_dihedral_angle_4_deg 16.465 r_dihedral_angle_3_deg 13.95 r_dihedral_angle_1_deg 6.634 r_long_range_B_other 5.338 r_long_range_B_refined 5.335 r_scangle_other 4.576 r_scbond_it 3.055 r_scbond_other 3.055 r_mcangle_it 2.513
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.369 r_dihedral_angle_4_deg 16.465 r_dihedral_angle_3_deg 13.95 r_dihedral_angle_1_deg 6.634 r_long_range_B_other 5.338 r_long_range_B_refined 5.335 r_scangle_other 4.576 r_scbond_it 3.055 r_scbond_other 3.055 r_mcangle_it 2.513 r_mcangle_other 2.513 r_mcbond_it 1.878 r_mcbond_other 1.874 r_angle_refined_deg 1.569 r_angle_other_deg 0.982 r_chiral_restr 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9929 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 176
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing