6HQ6

Bacterial beta-1,3-oligosaccharide phosphorylase from GH149


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP9293Null
Crystal Properties
Matthews coefficientSolvent content
2.6954.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.239α = 90
b = 158.986β = 90
c = 181.564γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2017-06-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9795DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0579.491000.1070.1110.030.99914.713.5181781
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.091002.3872.4780.6610.54913.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.0579.49172561911899.960.18340.1820.2109RANDOM60.281
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.26-0.470.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.469
r_dihedral_angle_4_deg17.598
r_dihedral_angle_3_deg13.774
r_dihedral_angle_1_deg6.524
r_angle_refined_deg1.234
r_angle_other_deg0.906
r_chiral_restr0.063
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.469
r_dihedral_angle_4_deg17.598
r_dihedral_angle_3_deg13.774
r_dihedral_angle_1_deg6.524
r_angle_refined_deg1.234
r_angle_other_deg0.906
r_chiral_restr0.063
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms17810
Nucleic Acid Atoms
Solvent Atoms901
Heterogen Atoms115

Software

Software
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CRANK2phasing