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Crystal structure of the aminotransferase Aro8 from C. Albicans with ligands
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6HNB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M MgCl2, 0.1 M Bis-Tris pH 5.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.785 α = 90 b = 102.09 β = 90 c = 146.883 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2017-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.8943 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.6 0.097 0.997 11.29 4.1 97014
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 98.6 0.687 1.9 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6HNB 1.8 45.33 92163 4851 99.63 0.17587 0.17362 0.1808 0.21871 0.2242 RANDOM 24.339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.28 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.244 r_dihedral_angle_4_deg 15.765 r_dihedral_angle_3_deg 14.199 r_dihedral_angle_1_deg 6.989 r_long_range_B_refined 5.748 r_long_range_B_other 5.567 r_scangle_other 3.861 r_mcangle_other 2.874 r_mcangle_it 2.868 r_scbond_it 2.543
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.244 r_dihedral_angle_4_deg 15.765 r_dihedral_angle_3_deg 14.199 r_dihedral_angle_1_deg 6.989 r_long_range_B_refined 5.748 r_long_range_B_other 5.567 r_scangle_other 3.861 r_mcangle_other 2.874 r_mcangle_it 2.868 r_scbond_it 2.543 r_scbond_other 2.543 r_angle_other_deg 2.281 r_mcbond_it 2.012 r_mcbond_other 2 r_angle_refined_deg 1.586 r_chiral_restr 0.085 r_bond_other_d 0.035 r_gen_planes_other 0.014 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7577 Nucleic Acid Atoms Solvent Atoms 1126 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing