6H9M

Coiled-coil domain-containing protein 90B residues 43-125 from Homo sapiens fused to a GCN4 adaptor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP294Molecular Dimensions Morpheus Screen, Well F2
Crystal Properties
Matthews coefficientSolvent content
1.9336.33

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.009α = 90
b = 298.178β = 90
c = 29.297γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2016-08-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.07030SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.137.399.80.0890.99913.46.2719522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.2398.80.8670.8351.896.46

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5APQ2.137.271854397699.740.232390.230950.25728RANDOM65.699
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.95-5.496.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.683
r_long_range_B_other19.602
r_long_range_B_refined19.575
r_scangle_other17.329
r_dihedral_angle_3_deg16.022
r_dihedral_angle_4_deg15.935
r_scbond_it15.227
r_scbond_other15.22
r_mcangle_it13.587
r_mcangle_other13.582
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.683
r_long_range_B_other19.602
r_long_range_B_refined19.575
r_scangle_other17.329
r_dihedral_angle_3_deg16.022
r_dihedral_angle_4_deg15.935
r_scbond_it15.227
r_scbond_other15.22
r_mcangle_it13.587
r_mcangle_other13.582
r_mcbond_other10.55
r_mcbond_it10.545
r_dihedral_angle_1_deg4.841
r_angle_refined_deg1.338
r_angle_other_deg1.265
r_chiral_restr0.072
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_bond_other_d0.006
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2253
Nucleic Acid Atoms
Solvent Atoms55
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing