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Coiled-coil domain-containing protein 90B residues 43-125 from Homo sapiens fused to a GCN4 adaptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5APQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 Molecular Dimensions Morpheus Screen, Well F2
Crystal Properties Matthews coefficient Solvent content 1.93 36.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.009 α = 90 b = 298.178 β = 90 c = 29.297 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.07030 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 37.3 99.8 0.089 0.999 13.4 6.27 19522
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.23 98.8 0.867 0.835 1.89 6.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5APQ 2.1 37.27 18543 976 99.74 0.23239 0.23095 0.2394 0.25728 0.2542 RANDOM 65.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -5.49 6.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.683 r_long_range_B_other 19.602 r_long_range_B_refined 19.575 r_scangle_other 17.329 r_dihedral_angle_3_deg 16.022 r_dihedral_angle_4_deg 15.935 r_scbond_it 15.227 r_scbond_other 15.22 r_mcangle_it 13.587 r_mcangle_other 13.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.683 r_long_range_B_other 19.602 r_long_range_B_refined 19.575 r_scangle_other 17.329 r_dihedral_angle_3_deg 16.022 r_dihedral_angle_4_deg 15.935 r_scbond_it 15.227 r_scbond_other 15.22 r_mcangle_it 13.587 r_mcangle_other 13.582 r_mcbond_other 10.55 r_mcbond_it 10.545 r_dihedral_angle_1_deg 4.841 r_angle_refined_deg 1.338 r_angle_other_deg 1.265 r_chiral_restr 0.072 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2253 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing