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MamM CTD D249N - Copper form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W5X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M AmSu,
0.1M BIS-TRIS pH=5.5,
25% PEG 3350,
1.7mM CuSO4
Crystal Properties Matthews coefficient Solvent content 1.95 37.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.732 α = 90 b = 94.631 β = 90 c = 53.521 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.975 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 47.32 99.7 0.04 0.999 20.9 6.4 10686
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 95 0.753 1.4 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3W5X 1.7 47.32 10141 529 99.64 0.19816 0.19593 0.2054 0.24582 0.2567 RANDOM 33.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.95 -0.83 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.72 r_dihedral_angle_4_deg 15.49 r_dihedral_angle_3_deg 14.233 r_dihedral_angle_1_deg 5.84 r_long_range_B_refined 5.621 r_long_range_B_other 5.558 r_scangle_other 3.253 r_scbond_it 2.107 r_scbond_other 2.099 r_mcangle_it 1.697
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.72 r_dihedral_angle_4_deg 15.49 r_dihedral_angle_3_deg 14.233 r_dihedral_angle_1_deg 5.84 r_long_range_B_refined 5.621 r_long_range_B_other 5.558 r_scangle_other 3.253 r_scbond_it 2.107 r_scbond_other 2.099 r_mcangle_it 1.697 r_mcangle_other 1.694 r_angle_refined_deg 1.609 r_mcbond_other 1.227 r_mcbond_it 1.225 r_angle_other_deg 0.818 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 613 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing