X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1M HEPES pH=7.5, 25% PEG 3350, 1.7mM MnCl2
Crystal Properties
Matthews coefficientSolvent content
1.6525.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.488α = 90
b = 62.826β = 90
c = 44.297γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.975ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.542.0199.20.038122.26.312949
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.52910.8142.25.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3W5X1.542.011229064899.040.184260.18210.22658RANDOM22.381
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.170.120.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.207
r_dihedral_angle_4_deg19.126
r_dihedral_angle_3_deg13.036
r_dihedral_angle_1_deg6.468
r_long_range_B_refined5.977
r_long_range_B_other5.975
r_scangle_other4.086
r_scbond_it2.871
r_scbond_other2.844
r_mcangle_other2.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.207
r_dihedral_angle_4_deg19.126
r_dihedral_angle_3_deg13.036
r_dihedral_angle_1_deg6.468
r_long_range_B_refined5.977
r_long_range_B_other5.975
r_scangle_other4.086
r_scbond_it2.871
r_scbond_other2.844
r_mcangle_other2.06
r_mcangle_it2.055
r_angle_refined_deg1.658
r_mcbond_it1.385
r_mcbond_other1.262
r_angle_other_deg0.804
r_chiral_restr0.092
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms644
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms4

Software

Software
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing