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MamM CTD H264E-E289H - Cadmium form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W5X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M AmSu,
0.1M BIS-TRIS pH=5.5,
25% PEG 3350,
1.7mM CdCl2
Crystal Properties Matthews coefficient Solvent content 1.9 35.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.231 α = 90 b = 94.249 β = 90 c = 53.096 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 53.1 99.6 0.051 0.999 29.1 12.4 6470
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 95.1 0.993 8.9 10.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3W5X 2 47.12 5831 626 99.57 0.18932 0.18611 0.1981 0.22012 0.222 RANDOM 39.871
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.12 -1.3 -2.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.764 r_dihedral_angle_4_deg 18.013 r_dihedral_angle_3_deg 14.397 r_dihedral_angle_1_deg 6.917 r_long_range_B_refined 5.848 r_long_range_B_other 5.829 r_scangle_other 3.604 r_mcangle_it 2.324 r_mcangle_other 2.324 r_scbond_it 2.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.764 r_dihedral_angle_4_deg 18.013 r_dihedral_angle_3_deg 14.397 r_dihedral_angle_1_deg 6.917 r_long_range_B_refined 5.848 r_long_range_B_other 5.829 r_scangle_other 3.604 r_mcangle_it 2.324 r_mcangle_other 2.324 r_scbond_it 2.213 r_scbond_other 2.194 r_angle_refined_deg 1.606 r_mcbond_it 1.51 r_mcbond_other 1.504 r_angle_other_deg 0.955 r_chiral_restr 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 628 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing