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Sad phasing on nickel-substituted human carbonic anhydrase II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 100 mM HEPES, 2.9 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.06 40.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.48 α = 90 b = 41.18 β = 109.25 c = 84.04 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2018-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.48306 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 45.34 93.8 0.044 0.999 12.6 3.1 154486
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.54 83.7 0.29 0.93 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 45.34 76886 4047 95.6 0.15243 0.14973 0.158 0.20365 0.1581 RANDOM 16.416
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 0.06 -0.6 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.499 r_sphericity_free 22.124 r_dihedral_angle_4_deg 20.943 r_dihedral_angle_3_deg 12.745 r_sphericity_bonded 11.88 r_dihedral_angle_1_deg 7.334 r_long_range_B_refined 4.212 r_long_range_B_other 4.05 r_rigid_bond_restr 3.95 r_scangle_other 3.868
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.499 r_sphericity_free 22.124 r_dihedral_angle_4_deg 20.943 r_dihedral_angle_3_deg 12.745 r_sphericity_bonded 11.88 r_dihedral_angle_1_deg 7.334 r_long_range_B_refined 4.212 r_long_range_B_other 4.05 r_rigid_bond_restr 3.95 r_scangle_other 3.868 r_scbond_it 3.541 r_scbond_other 3.54 r_mcangle_other 2.493 r_mcangle_it 2.491 r_mcbond_it 2.119 r_mcbond_other 2.115 r_angle_refined_deg 1.901 r_angle_other_deg 1.077 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4116 Nucleic Acid Atoms Solvent Atoms 672 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling autoSHARP phasing