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Carbomonoxy murine neuroglobin Gly-loop mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W92
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.6 M ammonium sulfate, 0.1 M tris pH 7.5, 4% PEG 1000
Crystal Properties Matthews coefficient Solvent content 3.61 65.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.859 α = 90 b = 74.859 β = 90 c = 77.229 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2018-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 38.6 90.4 0.194 0.9 3.1 6 7550
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.75 0.104 2443
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1W92 2.6 38.64 7550 442 99.96 0.19663 0.1936 0.1903 0.2457 0.2265 RANDOM 42.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.07 0.07 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.542 r_dihedral_angle_4_deg 24.55 r_dihedral_angle_3_deg 18.051 r_dihedral_angle_1_deg 6.849 r_angle_refined_deg 1.873 r_angle_other_deg 0.81 r_chiral_restr 0.191 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.542 r_dihedral_angle_4_deg 24.55 r_dihedral_angle_3_deg 18.051 r_dihedral_angle_1_deg 6.849 r_angle_refined_deg 1.873 r_angle_other_deg 0.81 r_chiral_restr 0.191 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1176 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing