6GUL

Siderophore hydrolase EstB mutant E211Q from Aspergillus fumigatus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2932 M ammonium sulfate
Crystal Properties
Matthews coefficientSolvent content
2.5150.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.67α = 90
b = 91.83β = 90
c = 130.55γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2016-05-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.97264ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.34597.90.074184.929327
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.497.90.4175

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6GUD2.31527731146097.440.206410.20410.25058RANDOM34.063
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.990.64-1.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.261
r_sphericity_free25.643
r_sphericity_bonded16.941
r_dihedral_angle_3_deg11.52
r_dihedral_angle_4_deg11.419
r_dihedral_angle_1_deg5.203
r_long_range_B_refined1.812
r_long_range_B_other1.737
r_mcangle_it0.867
r_mcangle_other0.867
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.261
r_sphericity_free25.643
r_sphericity_bonded16.941
r_dihedral_angle_3_deg11.52
r_dihedral_angle_4_deg11.419
r_dihedral_angle_1_deg5.203
r_long_range_B_refined1.812
r_long_range_B_other1.737
r_mcangle_it0.867
r_mcangle_other0.867
r_scangle_other0.749
r_angle_refined_deg0.731
r_angle_other_deg0.67
r_mcbond_it0.597
r_mcbond_other0.596
r_scbond_it0.511
r_scbond_other0.507
r_rigid_bond_restr0.157
r_chiral_restr0.03
r_bond_refined_d0.003
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4457
Nucleic Acid Atoms
Solvent Atoms185
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing