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CDK2/CyclinA in complex with Flavopiridol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H1S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 PROTEIN AT 5MG PER ML. 0.6 TO 0.8M KCL, 0.9 TO 1.2M (NH402SO4, AND 100MM HEPES (PH 7.0), 0.5mM Inhibitor
Crystal Properties Matthews coefficient Solvent content 2.95 58.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.184 α = 90 b = 136.224 β = 90 c = 149.973 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.987 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.52 101.04 100 0.2 8.5 7.5 52814
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.52 2.6 100 1.5 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H1S 2.52 101.04 50176 2638 99.95 0.19756 0.19543 0.2011 0.23822 0.2412 RANDOM 46.819
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.35 0.61 1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.358 r_dihedral_angle_4_deg 21.449 r_dihedral_angle_3_deg 17.63 r_long_range_B_refined 9.19 r_long_range_B_other 9.19 r_scangle_other 6.738 r_dihedral_angle_1_deg 6.128 r_mcangle_it 5.725 r_mcangle_other 5.725 r_scbond_it 4.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.358 r_dihedral_angle_4_deg 21.449 r_dihedral_angle_3_deg 17.63 r_long_range_B_refined 9.19 r_long_range_B_other 9.19 r_scangle_other 6.738 r_dihedral_angle_1_deg 6.128 r_mcangle_it 5.725 r_mcangle_other 5.725 r_scbond_it 4.15 r_scbond_other 4.15 r_angle_other_deg 3.671 r_mcbond_it 3.604 r_mcbond_other 3.596 r_angle_refined_deg 1.666 r_chiral_restr 0.094 r_bond_refined_d 0.014 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8918 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing