6G7G
Structure of SPH (Self-Incompatibility Protein Homologue) proteins, a widespread family of small, highly stable, secreted proteins from plants
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCACB | 0.3 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
2 | 3D HN(COCA)CB | 0.3 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
3 | 3D HNCO | 0.3 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
4 | 3D HNCA | 0.3 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
5 | 3D HNCACO | 0.3 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
11 | 3D HBHA(CO)NH | 0.3 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
10 | 3D HCCH-COSY | 0.3 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
9 | 3D HCCH-TOCSY | 1 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 500 |
8 | 3D 1H-15N TOCSY | 1 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Varian INOVA 800 |
7 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Varian INOVA 800 |
6 | 3D 1H-13C NOESY | 1 mM [U-13C; U-15N] Sph15 | 95% H2O/5% D2O | 0.01 M | 5.2 | 1 atm | 298 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Varian | INOVA | 800 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. | |
2 | structure calculation | ARIA | Linge, O'Donoghue and Nilges | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | peak picking | CcpNmr Analysis | CCPN |