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The X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) terpyridine compound (acid pH)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 283 20% ethylene glicol, 0.10 M sodium acetate pH 4.4, 0.60 M sodium nitrate
Crystal Properties Matthews coefficient Solvent content 1.97 37.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.49 α = 90 b = 78.49 β = 90 c = 36.73 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2016-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.96771 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 55.51 98.3 0.039 0.025 1 18.1 3.7 18842
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.57 100 0.514 0.219 0.672 3.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.49 55.5 17866 952 97.82 0.19566 0.19331 0.2028 0.24002 0.2409 RANDOM 26.439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -1.06 2.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.335 r_dihedral_angle_4_deg 16.592 r_dihedral_angle_3_deg 14.347 r_dihedral_angle_1_deg 6.289 r_long_range_B_refined 6.123 r_long_range_B_other 6.122 r_scangle_other 4.642 r_scbond_it 2.962 r_scbond_other 2.96 r_mcangle_other 2.878
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.335 r_dihedral_angle_4_deg 16.592 r_dihedral_angle_3_deg 14.347 r_dihedral_angle_1_deg 6.289 r_long_range_B_refined 6.123 r_long_range_B_other 6.122 r_scangle_other 4.642 r_scbond_it 2.962 r_scbond_other 2.96 r_mcangle_other 2.878 r_mcangle_it 2.87 r_mcbond_it 2.112 r_mcbond_other 2.096 r_angle_refined_deg 2.078 r_angle_other_deg 1.209 r_chiral_restr 0.128 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing