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Complex of neuraminidase from H1N1 influenza virus with tamiphosphor omega-azidohexyl ester
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 100 mM HEPES pH 7.0, 8% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.47 50.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.86 α = 90 b = 114.86 β = 90 c = 63.899 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918409 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 42.72 99.7 0.138 0.994 9.06 3.74 71773
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.96 99 0.782 0.575 1.74 3.55
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.84 42.71 70147 1799 99.78 0.15445 0.15338 0.1628 0.19671 0.2039 RANDOM 20.033
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.428 r_dihedral_angle_4_deg 13.804 r_dihedral_angle_3_deg 13.068 r_dihedral_angle_1_deg 7.304 r_long_range_B_refined 4.528 r_long_range_B_other 4.527 r_angle_other_deg 3.771 r_scangle_other 3.202 r_scbond_it 2.061 r_scbond_other 2.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.428 r_dihedral_angle_4_deg 13.804 r_dihedral_angle_3_deg 13.068 r_dihedral_angle_1_deg 7.304 r_long_range_B_refined 4.528 r_long_range_B_other 4.527 r_angle_other_deg 3.771 r_scangle_other 3.202 r_scbond_it 2.061 r_scbond_other 2.058 r_mcangle_other 1.98 r_mcangle_it 1.978 r_angle_refined_deg 1.66 r_mcbond_it 1.359 r_mcbond_other 1.355 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_other 0.013 r_gen_planes_refined 0.009 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5984 Nucleic Acid Atoms Solvent Atoms 793 Heterogen Atoms 191
Software Software Software Name Purpose REFMAC refinement XDS data reduction MOLREP phasing PDB_EXTRACT data extraction XDS data scaling