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Complement factor D in complex with the inhibitor 3-((3-((3-(aminomethyl)phenyl)amino)-1H-pyrazolo[3,4-d]pyrimidin-4-yl)amino)phenol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 22-25% PEG3350, 100 mM HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.12 41.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.508 α = 90 b = 50.064 β = 106.09 c = 39.264 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2008-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 30.12 97.6 15.54 2.8 41680
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.42 0.321 2.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.38 29.14 39594 2084 97.74 0.13558 0.13232 0.1978 0.216 RANDOM 18.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.02 0.13 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.717 r_sphericity_free 36.297 r_dihedral_angle_4_deg 16.341 r_dihedral_angle_3_deg 14.115 r_sphericity_bonded 11.708 r_dihedral_angle_1_deg 6.638 r_long_range_B_refined 5.846 r_rigid_bond_restr 5.404 r_long_range_B_other 5.054 r_scangle_other 4.709
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.717 r_sphericity_free 36.297 r_dihedral_angle_4_deg 16.341 r_dihedral_angle_3_deg 14.115 r_sphericity_bonded 11.708 r_dihedral_angle_1_deg 6.638 r_long_range_B_refined 5.846 r_rigid_bond_restr 5.404 r_long_range_B_other 5.054 r_scangle_other 4.709 r_scbond_it 4.399 r_scbond_other 4.398 r_mcangle_other 3.302 r_mcangle_it 3.294 r_mcbond_it 3.01 r_mcbond_other 2.886 r_angle_refined_deg 2.717 r_angle_other_deg 1.837 r_chiral_restr 0.183 r_bond_refined_d 0.03 r_gen_planes_refined 0.016 r_gen_planes_other 0.016 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1697 Nucleic Acid Atoms Solvent Atoms 317 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing