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HA1.7 TCR Study of CDR Loop Flexibility
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6EH4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 0.2M Na Citrate, 0.1M TrisHCl, 30% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.28 46.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.08 α = 90 b = 81.18 β = 90.37 c = 64.79 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2013-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 40.59 98.4 0.049 0.057 0.998 13.7 3.8 91903
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.41 95.8 0.545 0.638 0.736 2.3 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6EH4 1.37 40.59 87273 4602 98.31 0.16887 0.16769 0.19069 0.2097 RANDOM 19.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -0.16 -0.12 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.579 r_dihedral_angle_4_deg 15.164 r_dihedral_angle_3_deg 12.523 r_dihedral_angle_1_deg 6.884 r_long_range_B_refined 4.607 r_long_range_B_other 4.559 r_scangle_other 1.919 r_angle_refined_deg 1.842 r_mcangle_other 1.369 r_mcangle_it 1.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.579 r_dihedral_angle_4_deg 15.164 r_dihedral_angle_3_deg 12.523 r_dihedral_angle_1_deg 6.884 r_long_range_B_refined 4.607 r_long_range_B_other 4.559 r_scangle_other 1.919 r_angle_refined_deg 1.842 r_mcangle_other 1.369 r_mcangle_it 1.368 r_scbond_it 1.324 r_scbond_other 1.323 r_angle_other_deg 1.03 r_mcbond_it 0.824 r_mcbond_other 0.818 r_chiral_restr 0.118 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3497 Nucleic Acid Atoms Solvent Atoms 379 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data reduction Aimless data scaling PHASER phasing