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X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 278 .1 M 2-(N-morpholino)ethanesulfonic acid (MES), pH 6.0, 31 % PEG 5000
Crystal Properties Matthews coefficient Solvent content 2.14 42.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.8 α = 90 b = 50.13 β = 90 c = 65.07 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2013-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.3 0.894 BESSY 14.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 75.9 95.5 0.058 13.69 2 38187
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 96.6 0.211 4.35 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 75.9 37003 1184 95.56 0.16499 0.16362 0.20628 0.1852 RANDOM 13.64
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.83 -0.59 -1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.226 r_dihedral_angle_4_deg 13.988 r_dihedral_angle_3_deg 12.91 r_dihedral_angle_1_deg 5.728 r_long_range_B_refined 4.976 r_long_range_B_other 4.976 r_scangle_other 2.789 r_scbond_it 1.806 r_scbond_other 1.788 r_mcangle_it 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.226 r_dihedral_angle_4_deg 13.988 r_dihedral_angle_3_deg 12.91 r_dihedral_angle_1_deg 5.728 r_long_range_B_refined 4.976 r_long_range_B_other 4.976 r_scangle_other 2.789 r_scbond_it 1.806 r_scbond_other 1.788 r_mcangle_it 1.7 r_mcangle_other 1.7 r_angle_refined_deg 1.416 r_mcbond_it 1.094 r_mcbond_other 1.091 r_angle_other_deg 0.968 r_chiral_restr 0.087 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3920 Nucleic Acid Atoms Solvent Atoms 442 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing