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X-ray structure of animal-like Cryptochrome from Chlamydomonas reinhardtii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 0.1 M MES, pH 6.0 with 15 % PEG 5000
Crystal Properties Matthews coefficient Solvent content 2.13 42.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 150.249 α = 90 b = 50.528 β = 90 c = 64.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.992 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.8 96.6 0.07 7.15 1.53 22003 19.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 29.8 21265 682 96.53 0.16963 0.16778 0.1751 0.22753 0.2381 RANDOM 21.548
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 0.03 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.03 r_dihedral_angle_4_deg 15.123 r_dihedral_angle_3_deg 13.808 r_dihedral_angle_1_deg 6.408 r_long_range_B_refined 4.319 r_long_range_B_other 4.319 r_scangle_other 2.787 r_mcangle_it 2.021 r_mcangle_other 2.021 r_scbond_it 1.711
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.03 r_dihedral_angle_4_deg 15.123 r_dihedral_angle_3_deg 13.808 r_dihedral_angle_1_deg 6.408 r_long_range_B_refined 4.319 r_long_range_B_other 4.319 r_scangle_other 2.787 r_mcangle_it 2.021 r_mcangle_other 2.021 r_scbond_it 1.711 r_scbond_other 1.709 r_angle_refined_deg 1.437 r_mcbond_it 1.243 r_mcbond_other 1.242 r_angle_other_deg 0.978 r_chiral_restr 0.087 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3940 Nucleic Acid Atoms Solvent Atoms 258 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing