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Bovine trypsin solved by S-SAD on ID30B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 25% PEG 8000, 0.2 M ammonium sulfate and 100mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.87 57.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.947 α = 90 b = 64.107 β = 90 c = 69.694 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M Be CRL/Si Elliptical mirror 2017-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 2.066 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 97.2 0.115 0.118 0.024 0.997 24.9 11.8 13845 15.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 85.8 0.264 0.275 0.074 0.98 10.4 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 47.18 13063 745 97.59 0.17637 0.174 0.21952 0.2849 RANDOM 11.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.58 -2.44 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.112 r_dihedral_angle_3_deg 10.654 r_dihedral_angle_4_deg 10.386 r_dihedral_angle_1_deg 6.977 r_long_range_B_refined 4.605 r_long_range_B_other 4.476 r_scangle_other 2.267 r_scbond_it 1.818 r_scbond_other 1.561 r_mcangle_it 1.426
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.112 r_dihedral_angle_3_deg 10.654 r_dihedral_angle_4_deg 10.386 r_dihedral_angle_1_deg 6.977 r_long_range_B_refined 4.605 r_long_range_B_other 4.476 r_scangle_other 2.267 r_scbond_it 1.818 r_scbond_other 1.561 r_mcangle_it 1.426 r_mcangle_other 1.426 r_angle_refined_deg 1.307 r_mcbond_it 0.942 r_mcbond_other 0.941 r_angle_other_deg 0.888 r_chiral_restr 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1629 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling CRANK2 phasing