X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293200 mM CaCl2, 100 mM sodium acetate pH 5.0, 20%w/v PEG 6000
Crystal Properties
Matthews coefficientSolvent content
3.1160.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.048α = 90
b = 51.048β = 90
c = 64.955γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-12-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9794DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.344.211000.997109.824651
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.321000.8680.98.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.344.212347811411000.143590.142180.17217RANDOM18.051
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.120.060.12-0.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.894
r_sphericity_free26.65
r_sphericity_bonded10.085
r_dihedral_angle_3_deg9.755
r_dihedral_angle_1_deg6.027
r_dihedral_angle_4_deg5.74
r_long_range_B_refined4.661
r_scbond_it4.567
r_scbond_other4.56
r_long_range_B_other4.115
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.894
r_sphericity_free26.65
r_sphericity_bonded10.085
r_dihedral_angle_3_deg9.755
r_dihedral_angle_1_deg6.027
r_dihedral_angle_4_deg5.74
r_long_range_B_refined4.661
r_scbond_it4.567
r_scbond_other4.56
r_long_range_B_other4.115
r_scangle_other3.882
r_rigid_bond_restr3.71
r_angle_refined_deg1.78
r_mcangle_it1.67
r_mcangle_other1.668
r_mcbond_other1.447
r_mcbond_it1.446
r_angle_other_deg1.086
r_chiral_restr0.142
r_bond_refined_d0.019
r_gen_planes_refined0.012
r_gen_planes_other0.004
r_bond_other_d0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms550
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms1

Software

Software
Software NamePurpose
GDAdata collection
XDSdata reduction
Aimlessdata scaling
SHELXCDphasing
BUCCANEERmodel building
ARP/wARPmodel building
REFMACrefinement
Cootmodel building
MolProbitymodel building