6FE6 | pdb_00006fe6

Solution structure of a last generation P2-P4 macrocyclic inhibitor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC500 uM [U-99% 15N] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
22D 1H-15N HSQC500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
32D 1H-13C HSQC aliphatic500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide100% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
72D 1H-13C HSQC aromatic500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide100% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
43D HNCO500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
53D HNCA500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
63D HN(CO)CA500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
83D CBCANH500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
93D CBCA(CO)NH500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
103D 1H-15N NOESY500 uM [U-99% 15N] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
123D 1H-15N TOCSY500 uM [U-99% 15N] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
113D 1H-13C NOESY aliphatic500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
133D 1H-13C NOESY aromatic500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide95% H2O/5% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
14F1-edited, F3-filtered 3D HMQC-NOESY500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide100% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
15double-filtered [F1-C/N,F2-C/N]-NOESY500 uM [U-99% 15N] [U-99% 13C] HCV NS3 protease, 500 uM NA P2P4M, 100 mM NA sodium chloride, 0.3 % deuterated n-octyl beta-D-glucopyranoside, 1 mM NA DTT, 0.01 % NA sodium azide100% D2O100 mM NaCl mM6.81 atm308Bruker AVANCE 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
molecular dynamicsXplor-NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number18
Conformers Submitted Total Number18
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentNMRViewJohnson, One Moon Scientific
5collectionTopSpinBruker Biospin
6processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2structure calculationXplor-NIHSchwieters, Kuszewski, Tjandra and Clore
3data analysisTALOSCornilescu, Delaglio and Bax
4peak pickingNMRViewJohnson, One Moon Scientific