6FDT

NMR structure of the second TPR domain of the human RPAP3 protein in complex with HSP70 peptide SGPTIEEVD


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCA1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
23D HNCACB1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
33D CBCA(CO)NH1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
43D HNCO1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
53D HNHA1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
133D HCCH-TOCSY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
153D HCCH-COSY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
142D 1H-15N HSQC1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
122D 1H-13C HSQC1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
113D 1H-15N NOESY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
103D 1H-15N NOESY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
93D X-half filtered 1H-15N NOESY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
83D X-half filtered 1H-13C NOESY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP95% H2O/5% D2O150 mM6.41 atm293Bruker AVANCE III 600
73D X-half filtered 1H-13C NOESY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP100% D2O150 mM6.41 atm293Bruker AVANCE III 600
62D double X-half filtered 1H-1H NOESY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP100% D2O150 mM6.41 atm293Bruker AVANCE III 600
163D 1H-13C NOESY1 mM [U-13C; U-15N] RPAP3-TPR2, 1 mM HSP70-pep, 150 mM sodium chloride, 10 mM sodium phosphate, 0.5 mM TCEP100% D2O150 mM6.41 atm293Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsuse of the AMPS-NMR web portalAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest restraint energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2chemical shift assignmentCARAKeller and Wuthrich
3structure calculationCYANAGuntert, Mumenthaler and Wuthrich
4structure calculationTALOSCornilescu, Delaglio and Bax
5refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman