6F4Z

2'F-araG modified quadruplex with flipped G-tract and central tetrad


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.37 mM DNA, 10 mM potassium phosphate90% H2O/10% D2O10 mM71 atm298Bruker Avance 600
22D 1H-13C HSQC aromatic0.37 mM DNA, 10 mM potassium phosphate90% H2O/10% D2O10 mM71 atm298Bruker Avance 600
32D DQF-COSY0.37 mM DNA, 10 mM potassium phosphate100% D2O10 mM71 atm298Bruker Avance 600
42D 1H-1H TOCSY0.37 mM DNA, 10 mM potassium phosphate100% D2O10 mM71 atm298Bruker Avance 600
52D 1H-1H NOESY0.37 mM DNA, 10 mM potassium phosphate100% D2O10 mM71 atm298Bruker Avance 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
NMR Refinement
MethodDetailsSoftware
DGSA-distance geometry simulated annealingXplor-NIH
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriaall calculated structures submitted
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationXplor-NIHSchwieters, Kuszewski, Tjandra and Clore
2refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3chemical shift assignmentCcpNmr AnalysisCCPN
4peak pickingCcpNmr AnalysisCCPN