6F2X | pdb_00006f2x

Structural characterization of the Mycobacterium tuberculosis Protein Tyrosine Kinase A (PtkA)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 900
22D 1H-15N HSQC0.2 mM [U-13C; U-15N; U-2H] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
32D 1H-15N HSQC0.3 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O330 mM2ambient mbar298Bruker AVANCE 800
43D HNHA0.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 600
53D HNCA0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 600
63D HN(CO)CA0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 600
73D HNCACB0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
83D HN(COCA)CB0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
93D HNCO0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
103D HCC(CO)NH0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 600
113D CC(CO)NH0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 600
123D HCCH-TOCSY0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 600
133D 1H-15N NOESY0.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 900
142D 1H-13C HSQC aliphatic0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
242D 1H-13C HSQC aromatic0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 900
173D 1H-13C NOESY aliphatic0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
183D 1H-13C NOESY aromatic0.2 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 900
192D 1H-15N HETNOE0.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 700
202D 1H-15N T10.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 700
212D 1H-15N T20.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 700
222D 1H-15N IPAP-HSQC0.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 700
232D 1H-15N IPAP-HSQC0.2 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 700
253D HNCACB0.3 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O330 mM2ambient mbar298Bruker AVANCE 800
263D HN(CA)NNH0.3 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O330 mM2ambient mbar298Bruker AVANCE 800
273D 1H-15N NOESY0.3 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O330 mM2ambient mbar298Bruker AVANCE 800
283D HNCO0.3 mM [U-13C; U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O330 mM2ambient mbar298Bruker AVANCE 800
293D HNHA0.3 mM [U-15N] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O330 mM2ambient mbar298Bruker AVANCE 600
303D HNCACB0.2 mM [U-13C; U-15N; U-2H] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
313D HN(COCA)CB0.2 mM [U-13C; U-15N; U-2H] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
323D HNCO0.2 mM [U-13C; U-15N; U-2H] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
333D HN(CA)CO0.2 mM [U-13C; U-15N; U-2H] PtkA, 50 mM HEPES, 300 mM sodium chloride, 10 mM DTT, 10 mM magnesium chloride90% H2O/10% D2O354 mM7.5ambient mbar298Bruker AVANCE 950
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE700
3BrukerAVANCE800
4BrukerAVANCE900
5BrukerAVANCE950
NMR Refinement
MethodDetailsSoftware
simulated annealing with torsion angle dynamicsstructure determinationCYANA
cartesian angle dynamicsenergy minimizationCNS
molecular dynamicsrefinement in waterARIA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingTopSpin3.2Bruker Biospin
3chemical shift assignmentSparky3.114Goddard and Kneller
4peak pickingSparky3.114Goddard and Kneller
5data analysisSparky3.114Goddard and Kneller
6structure calculationCYANA3.97Guntert, Mumenthaler and Wuthrich
7structure calculationCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
8refinementARIA1.2 HJ development versionLinge, O'Donoghue and Nilges