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Bacterial asc transporter crystal structure in open to in conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DJI 4DJI, 4KRN experimental model PDB 4KRN 4DJI, 4KRN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 28%PEG400 0,1M
0,1M Ammonium acetate pH8
Crystal Properties Matthews coefficient Solvent content 4.94 75.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.83 α = 90 b = 85.83 β = 90 c = 321.69 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS3 S 6M 2016-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.92 83.05 98.2 0.058 0.065 0.028 0.999 12.6 5.5 26615 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.92 3.08 95 0.885 1.117 0.673 0.431 1.3 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DJI, 4KRN 2.92 83.05 19132 972 74.12 0.2395 0.23843 0.2404 0.26123 0.2607 RANDOM 116.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.38 -1.38 2.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.49 r_dihedral_angle_3_deg 21.124 r_dihedral_angle_4_deg 17.816 r_long_range_B_other 9.086 r_long_range_B_refined 9.085 r_dihedral_angle_1_deg 5.764 r_mcangle_it 4.805 r_mcangle_other 4.804 r_scangle_other 4.255 r_mcbond_it 2.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.49 r_dihedral_angle_3_deg 21.124 r_dihedral_angle_4_deg 17.816 r_long_range_B_other 9.086 r_long_range_B_refined 9.085 r_dihedral_angle_1_deg 5.764 r_mcangle_it 4.805 r_mcangle_other 4.804 r_scangle_other 4.255 r_mcbond_it 2.95 r_mcbond_other 2.949 r_scbond_it 2.532 r_scbond_other 2.529 r_angle_refined_deg 1.965 r_angle_other_deg 1.136 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4252 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement STARANISO data scaling autoPROC data scaling PHASER phasing XDS data reduction pointless data scaling Aimless data scaling