6F0Y
Rtt109 peptide bound to Asf1
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCO | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
2 | 3D HCCH-TOCSY | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
3 | (HB)CB(CGCD)HD | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
4 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
5 | 3D 1H-13C NOESY | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
6 | 3D 13C,15N filtered 1H-13C NOESY | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
7 | 2D 1H-15N HSQC | 0.15 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 0.5 mM histone acetyltransferase Rtt109 C-terminus | 100% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
8 | 2D 1H-15N HSQC | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 600 |
9 | 2D 1H-15N HSQC | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 600 |
10 | 2D 1H-15N TROSY-HSQC | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 600 |
11 | 2D 1H-15N TROSY-HSQC | 0.5 mM [U-99% 13C; U-99% 15N] Histone chaperone Asf1, 3 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 600 |
12 | 2D 1H-1H TOCSY | 0.5 mM [U-99% 13C; U-99% 15N; U-99% 2D] Histone chaperone ASF1, 0.15 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
13 | 2D 1H-1H NOESY | 0.5 mM [U-99% 13C; U-99% 15N; U-99% 2D] Histone chaperone ASF1, 0.15 mM histone acetyltransferase Rtt109 C-terminus | 90% H2O/10% D2O | 150 mM | 6.2 | ambient Pa | 298 | Bruker AVANCE III HD 850 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 850 |
2 | Bruker | AVANCE III HD | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS | |
torsion angle dynamics | CNS | |
molecular dynamics | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (medoid) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 3.2 | Bruker Biospin |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | peak picking | CcpNmr Analysis | 2.4.2 | CCPN |
2 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
3 | structure calculation | CNS | 1.21 | Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren |
4 | structure calculation | ARIA | 2.3 | W. Rieping, M. Habeck, B. Bardiaux, A. Bernard, T.E. Malliavin, M. Nilges |
7 | data analysis | PALES | M. Zweckstetter | |
8 | data analysis | TALOS-N | Y. Shen, A. Bax | |
9 | structure calculation | CNS | 1.21 | Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren |
10 | structure calculation | CNS | 1.21 | Brunger, Adams, Clore, Delano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren |