6F0F

Crystal structure ASF1-ip2_s


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION7.5298Tris-HCl 0.1M pH7.5, PEG8000 5%
Crystal Properties
Matthews coefficientSolvent content
5.0675.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.41α = 90
b = 61.41β = 90
c = 220.38γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray80CCDADSC QUANTUM 315r2009-05-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 10.98SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1230.9310024.26.428132
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.12

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2io5230.932813214811000.18840.18640.2265RANDOM43.094
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.811.81-3.62
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.686
r_dihedral_angle_4_deg19.335
r_dihedral_angle_3_deg15.414
r_dihedral_angle_1_deg6.507
r_angle_refined_deg1.546
r_nbtor_refined0.313
r_symmetry_vdw_refined0.224
r_nbd_refined0.21
r_symmetry_hbond_refined0.192
r_xyhbond_nbd_refined0.181
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.686
r_dihedral_angle_4_deg19.335
r_dihedral_angle_3_deg15.414
r_dihedral_angle_1_deg6.507
r_angle_refined_deg1.546
r_nbtor_refined0.313
r_symmetry_vdw_refined0.224
r_nbd_refined0.21
r_symmetry_hbond_refined0.192
r_xyhbond_nbd_refined0.181
r_chiral_restr0.136
r_bond_refined_d0.013
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1444
Nucleic Acid Atoms
Solvent Atoms343
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
MOLREPphasing