6ESP
Proteome-wide analysis of phospho-regulated PDZ domain interactions
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 100 % [U-100% 13C] Scribble PDZ1 | 90% H2O/10% D2O | na | 6.5 | 1 Pa | 298 | Bruker Avance 600 |
| 2 | 2D 1H-15N HSQC | 100 % [U-100% 13C] Scribble PDZ1 | 90% H2O/10% D2O | na | 6.5 | 1 Pa | 298 | Bruker Avance 900 |
| 3 | 3D 1H-1H TOCSY | 100 % [U-100% 13C] Scribble PDZ1 | 90% H2O/10% D2O | na | 6.5 | 1 Pa | 298 | Bruker Avance 900 |
| 4 | 3D HNCACB | 100 % [U-100% 13C] Scribble PDZ1 | 90% H2O/10% D2O | na | 6.5 | 1 Pa | 298 | Bruker Avance 600 |
| 5 | 3D 1H-1H NOESY | 100 % [U-100% 13C] Scribble PDZ1 | 90% H2O/10% D2O | na | 6.5 | 1 Pa | 298 | Bruker Avance 600 |
| 6 | 3J HNHA | 100 % [U-100% 13C] Scribble PDZ1 | 90% H2O/10% D2O | na | 6.5 | 1 Pa | 298 | Bruker Avance 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | Avance | 600 |
| 2 | Bruker | Avance | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | all calculated structures submitted |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
| 4 | peak picking | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
