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Structure of mouse wild-type RKIP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IQY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293.15 PEG 6000, sodium acetate pH 4.6
Crystal Properties Matthews coefficient Solvent content 1.99 38.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.58 α = 90 b = 54.09 β = 90 c = 97.95 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2011-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 23.06 98.5 0.082 8.6 4 42630
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 97.3 0.644 2 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2IQY 1.3 20 40315 2148 98.13 0.12695 0.12478 0.1274 0.16809 0.1703 RANDOM 16.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.55 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.817 r_sphericity_free 19.11 r_dihedral_angle_4_deg 14.771 r_dihedral_angle_3_deg 11.205 r_sphericity_bonded 10.304 r_dihedral_angle_1_deg 6.082 r_long_range_B_refined 3.142 r_long_range_B_other 3.142 r_scangle_other 1.907 r_rigid_bond_restr 1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.817 r_sphericity_free 19.11 r_dihedral_angle_4_deg 14.771 r_dihedral_angle_3_deg 11.205 r_sphericity_bonded 10.304 r_dihedral_angle_1_deg 6.082 r_long_range_B_refined 3.142 r_long_range_B_other 3.142 r_scangle_other 1.907 r_rigid_bond_restr 1.77 r_scbond_it 1.574 r_scbond_other 1.573 r_angle_refined_deg 1.559 r_mcangle_other 1.4 r_mcangle_it 1.399 r_mcbond_other 1.093 r_mcbond_it 1.07 r_angle_other_deg 0.995 r_chiral_restr 0.106 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1451 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing