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CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH SINGLE CHAIN FV FRAGMENT 4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 100 mM sodium citrate, 20% PEG 6000
Crystal Properties Matthews coefficient Solvent content 4.19 70.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.635 α = 90 b = 170.905 β = 90 c = 185.96 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.82 46.83 88.3 0.17 9.7 6.3 27051
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.82 2.92 37.2 0.494 1.5 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.82 46.83 25664 1348 88.16 0.22874 0.22702 0.2319 0.26272 0.2667 RANDOM 40.385
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.49 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.855 r_dihedral_angle_4_deg 16.939 r_dihedral_angle_3_deg 15.939 r_dihedral_angle_1_deg 6.105 r_angle_refined_deg 0.99 r_angle_other_deg 0.76 r_scangle_it 0.589 r_scbond_it 0.354 r_mcangle_it 0.341 r_mcbond_it 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.855 r_dihedral_angle_4_deg 16.939 r_dihedral_angle_3_deg 15.939 r_dihedral_angle_1_deg 6.105 r_angle_refined_deg 0.99 r_angle_other_deg 0.76 r_scangle_it 0.589 r_scbond_it 0.354 r_mcangle_it 0.341 r_mcbond_it 0.312 r_symmetry_vdw_refined 0.29 r_nbd_refined 0.187 r_nbd_other 0.176 r_nbtor_refined 0.174 r_symmetry_hbond_refined 0.164 r_symmetry_vdw_other 0.145 r_xyhbond_nbd_refined 0.114 r_nbtor_other 0.083 r_chiral_restr 0.059 r_xyhbond_nbd_other 0.025 r_mcbond_other 0.024 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4902 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling DENZO data reduction PHASER phasing