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Crystal structure of Mycobacterium tuberculosis ICL2 in complex with acetyl-CoA, form I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 9% w/v PEG 4K, 18% v/v glycerol, 0.02 M amino acids, 0.1 M MES/imidazole pH 6.9
Crystal Properties Matthews coefficient Solvent content 2.74 55.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.423 α = 90 b = 170.741 β = 95 c = 107.011 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.95373 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 106.6 100 7.1 7 106792
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.72
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.67 49.34 101518 5221 99.93 0.2198 0.21868 0.2269 0.24099 0.2462 RANDOM 63.248
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.4 -0.29 3.4 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.663 r_dihedral_angle_4_deg 16.74 r_dihedral_angle_3_deg 15.641 r_dihedral_angle_1_deg 5.468 r_long_range_B_refined 3.96 r_long_range_B_other 3.937 r_mcangle_it 2.304 r_mcangle_other 2.304 r_scangle_other 2.073 r_mcbond_it 1.325
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.663 r_dihedral_angle_4_deg 16.74 r_dihedral_angle_3_deg 15.641 r_dihedral_angle_1_deg 5.468 r_long_range_B_refined 3.96 r_long_range_B_other 3.937 r_mcangle_it 2.304 r_mcangle_other 2.304 r_scangle_other 2.073 r_mcbond_it 1.325 r_mcbond_other 1.324 r_scbond_it 1.168 r_scbond_other 1.168 r_angle_refined_deg 0.913 r_angle_other_deg 0.715 r_chiral_restr 0.04 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22999 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 204
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing